Center for Informatics Research in Science and Scholarship

Graduate School of Library and Information Science
Center for Informatics Research in Science and Scholarship
University of Illinois at Urbana-Champaign

 University of Illinois at Urbana-Champaign

CIRSS Publications & Presentations

List organized by type of publication/presentation, then year, then author. List includes papers by affiliated researchers as well as CIRSS faculty and staff.

Journal Papers | Reviews, Chapters & Reports | Conference Presentations

Conference Posters | Presentations (all) | Technical Reports

 

Journal Papers

     2009

     2008

  • Heidorn, P. B. (2008). Shedding light on the dark data in the long tail of science. Library Trends, 57(2), 280-299.

  • Jackson, A. S., Han, M., Groetsch, K., Mustafoff, M., & Cole, T. W. (2008). Dublin Core Metadata Harvested through OAI-PMH. Journal of Library Metadata, 8(1), 5-21.

  • Palmer, C. L., Teffeau, L. C., & Newton, M. P. (2008). Strategies for institutional repository development: A case study of three evolving initiatives. Library Trends, 57(2), 142-167.

  • Zavalina, O., Palmer, C. L., Jackson, A. S., Han, M. (2008). Evaluating descriptive richness in collection-level metadata. In Journal of Library Metadata, 8(4), 263-292.

     2007

  • Heidorn, P. B., Palmer, C. L., & Wright, D. (2007). Biological Information Specialists for Biological Informatics. Journal of Biomedical Discovery and Collaboration, 2(1). Retrieved February 25, 2009 from, http://www.j-biomed-discovery.com/content/2/1/1

  • Hong, C., & Heidorn, P. B. (2007). The reusability of induced knowledge for the automatic semantic markup of taxonomic descriptions. Journal of the American Society for Information Science and Technology, 58(1), 133-149.

  • Palmer, C. L., Cragin, M. H., and Hogan, T. P. (2007). Weak Information Work in Scientific Discovery. Information Processing and Management, 43(3), 808-820.

  • Palmer, C. L., Heidorn, P. B., Wright, D. & Cragin, M. H. (2007). Graduate Curriculum for Biological Information Specialists: A key to integration of scale in biology. International Journal of Data Curation, 2(2), 31-40.

  • Urban, R. (2007). Second life, serious leisure and LIS. Bulletin of the American Society for Information Science & Technology.

     2006

  • Blake, C. & Pratt, W. (2006). Collaborative information synthesis I: A model of information behaviors of scientists in medicine and public health. Journal of the American Society for Information Science and Technology, 57(13), 1740-9.

  • Blake, C. & Pratt, W. (2006). Collaborative information synthesis II: Recommendations for information systems that support synthesis activities. Journal of the American Society for Information Science and Technology, 57(14), 1888-95.


Reviews, Chapters and Reports

     2009

     2008

     2006

Conference Proceedings

     2009

  • Bartlett, J. C., Hemminger, B. M., MacMullen, W. J., & Benoit, G. (2009, March 18-29). Evolving curricula in LIS-focused bioinformatics programs. Presentation at the Annual Meeting of the American Society for Information Science & Technology (ASIS&T), Memphis, TN.

  • Smith, C. A., Agnew, G., Cragin, M., Dryden, J., & Eschenfelder, K. R. (2009 April 1-3). Policy Issues in Data Curation. Panel discussion at DiggCCurr Conference: Digital Curation Practice, Promise, and Prospects. Chapel Hill, NC.

  • Cragin, M. H., Smith, L. C., Palmer, C. L., & Heidorn, P. B. (2009, April 1-3). Extending the data curation curriculum to practicing LIS professionals. Panel for DigCCurr 2009: Digital Curation Practice, Promise and Prospects, Chapel Hill, NC.

  • Hill, J. I., MacMullen, W. J., & Palmer, C. (2009, March 18-29). Characteristics of bioinformatics employment advertisements. The Presentation at the Annual Meeting of the American Society for Information Science & Technology (ASIS&T), Memphis, TN.

  • MacMullen, W. J., Meadows, S. J., & Huang, S. (2009). A characterization of manual literature annotations by biocurators. Presentation at the 2009 North American Chapter of the Association for Computational Linguistics - Human Language Technologies (NAACL HLT) Conference.

  • Urban, R. (2009). Blended methods for ontology development. Presented at the Association for Library and Information Science Education (ALISE) Conference. Denver, CO.

  • Urban, R. J. (2009). Blending grounded theory and ontology development methods. Presented at the Association of Library and Information Science Educators (ALISE) Conference. Denver, CO.

  • Urban, R. (2009). Modeling CDWA lite as and OWL-DL ontology. Presented at IConference 2009. Chapel Hill, NC.

  • Winget, M., Frick, C., McDonough, J., Rennear, A., & Lowood, H. (2009 April 1-3). Digital Curation of Humanistic, Multimedia Materials: Lessons Learned and Future Directions. Panel discussion at DiggCCurr Conference: Digital Curation Practice, Promise, and Prospects. Chapel Hill, NC.

     2008

     2007

  • Blake, C. (2007) The role of sentence structure in recognizing textual entailment. Proceedings of the ACL-PASCAL Workshop on Textual Entailment and Paraphrasing, p101-6. Prague, Czech Republic.

  • Cragin, M. H., D'Avolio, L., MacMullen, W. J., & Smith, C. A. (2007). The effects of context on data quality in biomedical data reuse. Presentation at the Annual Meeting of the American Society for Information Science & Technology (ASIS&T). Milwaukee, WI

  • D’Avolio, L., Cragin, M. H., MacMullen, W. J., & Arnot Smith, C. (2007). The effects of context on data quality in biomedical data reuse. Presentation at the 70th Annual Meeting of the American Society for Information Science and Technology (ASIS&T). Milwaukee, WI.

  • Floyd, I., & Renear, A. H. (2007). What exactly is a FRBR item in the digital world? In Proceedings of the 70th Annual Meeting of the American Society for Information Science and Technology, Milwaukee, WI.

  • Heidorn, P. B. (2007, October 25). Biological information management from molecules to ecosystems. Panel on “Biological Information Specialist Training,” at 2nd International BioCuration Meeting. San Jose, CA.

  • Heidorn, P. B. & Tibbo, H. (2007, October 19). Identifying Best Practices and Skills for Workforce Development in Data Curation. ASIS&T 2007 Annual Meeting, Joining Research and Practice: Social Computing and Information Science. Milwaukee, WI.

  • Heidorn, P. B., Palmer, C. L., Cragin, M. H., & Smith, L. C. (2007, April 18). Data Curation Education and Biological Information Specialists. DigCCurr2007: An international symposium on Digital Curation, Chapel Hill, NC.

  • Heidorn, P. B., Wei, Q. (2007, September). Using New Technologies for Education and Communication. Biodiversity Information Standards (TDWG) Annual Conference. Bratislava, Slovakia.

  • Lee, J. H., & Renear, A. H. (2007). How incorrect information delivers correct search results: A pragmatic analysis of queries. Presentation at the 70th Annual Meeting of the American Society for Information Science and Technology, Milwaukee, WI.

  • MacMullen, W. J. (2007). Measuring variation in curators' GO annotations through a controlled multi-MOD study. Presentation at the Second International Biocurator Meeting, San Jose, CA.

  • Palmer, C. L. (2007, April 24-26). Adapting Digital Information to Scientific Practices. STM Spring Conference: The Next Generation: Endless Choices & Economic Constraints, Cambridge, MA.

  • Palmer, C. L., Cragin, M. H., & Heidorn, P. B. (2007). Supporting biological information work: Research and education for digital resources and long-lived data. The 6th ACM/IEEE-CS Joint Conference on Digital Libraries (pg. 353), Vancouver, BC, Canada.

  • Palmer, C. L., Cragin, M. H., Heidorn, P. B., Smith, L. C. (2007, December). Data Curation for the Long Tail of Science: The Case of Environmental Sciences. Digital Curation Conference, Washington, DC.

  • Palmer, C. L., Cragin, M. H., Heidorn, P. B., & Smith, L. C. (2007). Studies of data curation for the long tail of science. 3rd International Digital Curation Conference, Washington DC.

  • Palmer, C. L., Cragin, M. H., Heidorn, P. B., Wright, D. (2007, July). Information Specialist's Training in Biology. Botany & Plant Biology 2007 Joint Congress. Chicago.

  • Palmer, C. L., Zavalina, O., Mustafoff, M. (2007). Trends in Metadata Practices: A Longitudinal Study of Collection Federation. In R. Larson, E. Rasmussen, S. Sugimoto & E. Toms (Eds.) Proceedings of the 7th ACM/IEEE Joint Conference on Digital Libraries (pp. 386-395). Vancouver, Canada, June 18-23, 2007.

  • Renear, A. H. (2007). Standard domain ontologies: The rate limiting step for the "next big change" in scientific communication. American Chemical Society, Division of Information, London.

  • Renear, A. H., & Dubin, D. (2007). Three of the four FRBR group 1 entity types are roles not types. Presented at the 70th Annual Meeting of the American Society for Information Science and Technology, Milwaukee, WI.

  • Shreeves, S. L. (2007). Creating rich shareable metadata: The DLF aquifer MODS implementation guidelines. Presented at the ALA Annual Conference. Washington, D.C.

  • Shreeves, S. L. (2007). OAI protocol, and shareable metadata: An introduction to the open archives initiative protocol for metadata harvesting. Presented at Web-Wise 2007, Washington, D.C.

  • Shreeves, S. L. (2007). The dynamics of sharing: An introduction to shareable metadata and interoperability. Presented at the Annual Conference of the Society for American Archivists. Chicago, IL.

  • Shreeves, S. L. (2007). The future of institutional repositories. Presented at the 70th Annual Meeting of the American Society for Information Science and Technology. Milwaukee, WI.

  • Tang, X., & Heidorn, P. B. (2007). The loss of domain knowledge in user search queries: A query log analysis of a botanical retrieval system. Presented at the 70th Annual Meeting of the American Society for Information Science and Technology. Milwaukee, Wisconsin.

  • Tang, X., & Heidorn, P. B. (2007). Using automatically generated morphological information in botanical text retrieval. Presented at Botany 2007, Chicago.

  • Unsworth, J. M. (2007). Cyberinfrastructure and open standards, methods, and communities. Presented at the Annual Convention of the Modern Language Association, Chicago.

  • Unsworth, J. M. (2007). The foundations and futures of digital humanities. Presented at the InFormation Year Conference, John Hope Franklin Center, Duke University. Durham, NC.

  • Unsworth, J. M. (2007). University 2.0. Integration of Information Services into University Infrastructures. Presented at the 7th Frankfurt Scientific Symposium, Universitat Frankfurt am Main. Frankfurt, Germany.

  • Urban, R. (2007). A second life for your museum. Presented at Museum Informatics. Graduate School of Library and Information Science. University of Illinois at Urbana-Champaign. Urbana, IL.

  • Urban, R. (2007). From fair use to fair trading: Creating a digital image matchmaking commons. Presented at Visual Resources Association Annual Conference. Kansas City, MO.

  • Urban, R. (2007). Museum metaverses. Presented at the Museum Computer Network Annual Meeting. Chicago.

  • Urban, R. (2007). What is a work? Presented at the Visual Resources Association Annual Meeting. Kansas City, MO.

  • Urban, R., Marty, P., & Twidale, M. B. (2007). A second life for your museum: 3D multi-user virtual environments and museums. In Proceedings, Museums and the Web. San Francisco, CA.

  • Urban, R. J., Twidale, M. B., & Marty, P. (2007). Second life: Museums and archeological modeling. Presented at Digital Humanities Conference. Champaign, IL.

  • Yu, B., & Unsworth, J. (2007, June). An evaluation of text classification methods for literary study. Presentation at Digital Humanities 2007, University of Illinois at Urbana-Champaign, Urbana, IL.

  • Zavalina, O. (2007). Collection-Level User Searches in Federated Digital Resource Environment. In Proceedings of the 70th Annual Meeting of the American Society for Information Science and Technology, 44. Milwaukee, WI, October 19-24, 2007.

     2006

  • Blake, C. & Rendall, M. (2006). Scientific discovery: A view from the trenches, In L. Todorovski, N. Lavrac, K. P. Jantke (Eds.). Lecture Notes in Computer Science, Discovery Science, 9th International Conference, p.41-52. Barcelona, Spain.

  • Cragin, M. H. (2006). The Roles of Shared Data Collections in Neuroscience. In Proceedings of the 2nd International Digital Curation Conference, “Digital Data Curation in Practice.” Glasgow, Scotland, November 21-22, 2006.

  • Cragin, M.H., MacMullen, W.J., Wallis, J., & Zimmerman, A. (2006). Scholarly communication: Scientists’ views of a changing landscape. Panel titled, “Managing Scientific Data for Long-term Access and Use,” In Proceedings of the 69th Annual Meeting of the American Society for Information Science and Technology, ASIS&T ‘06, Austin, TX, November 3-8, 2006.

  • Heidorn, P.B., Palmer, C.L., Wright, D., & Cragin, M.H. (2006). Graduate Curriculum for Biological Information Specialists: A key to integration of Scale in Biology. In Proceedings of the 2nd International Digital Curation Conference, “Digital Data Curation in Practice.” Glasgow, Scotland, November 21-22, 2006.

Conference Posters

     2009

     2008

     2007

     2006

Presentations (all)

     2008

  • Blake, C. (2008). Beyond genes, proteins, and abstracts: A framework to capture scientific claims. [Workshop] Microsoft eScience.

  • Cragin, M. H. (2008, April 15). Data Curation Services in Research Libraries. [Presentation] National Library of Medicine, Bethesda, MD.

  • MacMullen, W. J. (2008.). Introduction to digital scientific data. [Institute Presentation] Summer Institute on Data Curation, Graduate School of Library & Information Science, University of Illinois at Urbana-Champaign, Urbana, IL.

  • Shreeves, S. L. (2008). Open access: Overview and current trends. [Seminar] Presented for the Illinois Library Association. Chicago, IL.

  • Shreeves, S. L. (2008). The institutional repository as core infrastructure. [CARLI Workshop: The Nuts and Bolts of Institutional Repositories]. Chicago, IL.

  • Shreeves, S. L., & Larson, E. ( 2008). BibApp: Information architected. [Forum] Presented at the Digital Library Federation Spring Forum. Minneapolis, MN.

  • Unsworth, J. M. (2008). The importance of digitization to libraries and to humanities scholars. [Lecture] British Library. London.

     2007

  • Blake, C. (2007). In support of e-science - Shifting from information retrieval to information synthesis, [Workshop Abstract] 2007 Microsoft eScience Workshop at RENCI. Chapel Hill, NC.

  • Renear, A. H. (2007). The ontological status of the digital text: A pluralist approach. [Symposium] Presented at the 30th International Wittgenstein Symposium, Kirchberg, Austria.

  • Shreeves, S. L. (2007). Small science: First impression of curation needs. [Forum] Presented at the Digital Library Federation Fall Forum. Philadelphia, PA.

  • Shreeves, S. L. (2007). Standards (or lack thereof) in institutional repositories. [Forum] Presented at the Digital Library Federation Fall Forum. Philadelphia, PA.

  • Unsworth, J. M. (2007). Digital humanities centers as cyberinfrastructure. [Meeting] Summit Meeting for Directors of Digital Humanities Centers, Maryland Institute for Technology in the Humanities, College Park, MD.

  • Unsworth, J. M. (2007). Digital repositories and publishing in the humanities, arts, and social sciences: Challenges and opportunities. [Presentation] Society for Scholarly Publishing, "Opportunities for Publishers in a World of Institutional Repositories", Washington, DC.

  • Unsworth, J. (2007, March). Learning from NORA: Distributed software development in the humanities. [Seminar] Presented at Indiana University. Bloomington, IN.

  • Unsworth, J. M. (2007). New directions in humanities research. [Lecture] Stanford Humanities Center. Standord, CA.

Technical Reports

     2009

  • Palmer, C. L. (in press). Disciplinary research practices and library services in the online environment. Dublin, OH: OCLC Research and Programs.

  • Palmer, C. L. (in press). Information research on interdisciplinarity. In R. Frodeman, J. T. Klein & C. Mitcham (Eds.), Oxford handbook of interdisciplinarity. New York: Oxford University Press.

  • Shreeves, S. L. (in press). Cannot predict now: The role of repositories in the future of the journal. In B. Cope, & A. Phillips (Eds.), The future of the journal in the digital age. Oxford, U.K.: Chandos Press.

  • Twidale, M. B., & Nichols, D. M. (in press). Collaborative information retrieval. In M. Bates, & M. N. Maack (Eds.), The encyclopedia of library and information sciences. New York: Taylor & Francis.

  • Varvel, V. & Petrowski, M. J.(Eds.). (2009). 2007 Academic Library Trends and Statistics. Chicago: American Library Association.

     2008

     2007

  • Shreeves, S. L., Riley, J., & Hagedorn, K. (Eds.). (2007). Best practices for OAI data provider implementations and shareable metadata. Washington, D.C.: Digital Library Federation.

  • Stvilia, B., Gasser, L., & Twidale, M. B. (2007). Metadata quality problems in federated collections. In L. Al-Hakim (Ed.), Challenges of managing information quality in service organizations. (pp. 154-186) Hershey, PA: IGI Global.

 

 
 


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CIRSS
Graduate School of Library and Information Science
University of Illinois at Urbana-Champaign
501 E. Daniel Street, MC-493, Champaign, IL 61820-6211 USA
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